charm AT lists.siebelschool.illinois.edu
Subject: Charm++ parallel programming system
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- From: "Alexandre A. Vakhrouchev" <makaveli.lcf AT gmail.com>
- To: charm AT cs.uiuc.edu
- Subject: [charm] Xeon dual quadcore on Infiniband
- Date: Tue, 12 Feb 2008 22:40:16 +0400
- List-archive: <http://lists.cs.uiuc.edu/pipermail/charm>
- List-id: CHARM parallel programming system <charm.cs.uiuc.edu>
I tried to build NADM on cluster with following topology:
Calculation node: 2 Intel Xeon 5365 dual core CPUs on HP Proliant BL460c
Cluster interconnection: HP Mezzanine Infiniband DDR using Voltaire
communicators
Transport network: double integrated Gigabit Ethernet
I used
>./build charm++ mpi-linux-amd --no-build-shared -O -DCMK_OPTIMIZE=1
to build CHARM++ and Linux-amd64-MPI.arch to build NAMD:
NAMD_ARCH = Linux-amd64
CHARMARCH = mpi-linux-amd64
CXX = g++
CXXOPTS = -O3 -m64 -fexpensive-optimizations -ffast-math
CC = gcc
COPTS = -O3 -m64 -fexpensive-optimizations -ffast-math
and got following warnings:
icc: Command line warning: ignoring unknown option '-m64'
icc: Command line warning: ignoring unknown option
'-fexpensive-optimizations'
icc: Command line warning: ignoring unknown option '-ffast-math'
By default MPI system is tuned to use HP MPI compilers. Thus, I guess,
changing mpiCC to mpicxx in conv-march.sh (if I spell properly) didn't work
and quit at charm++ compilation stage with error "Unnable to use mpicxx as
linker". So I didn't change mpiCC. Than removed -lmpich from system libs
directive to successfully build NAMD (because it uses HP MPI instead of
MPICH).
NAMD works only using one cluster node. If I trie to use 2 nodes it hangs
with
Charm++ Warning: Non Charm++ Message Received.
Charm++ Warning: Non Charm++ Message Received.
Are the any keys to build CHARM++/NAMD properly for pointed cluster
configuration?
Thank you in advance!
--
Best regards,
Dr. Alexander Vakhrushev
Institute of Applied Mechanics
Dep. of Mech. and Phys.-Chem.
of heterogeneous mediums
UB of Russian Academy of Sciences
34 T. Baramzinoy St.
Izhevsk, Russia 426067
- [charm] Xeon dual quadcore on Infiniband, Alexandre A. Vakhrouchev, 02/12/2008
- Re: [charm] Xeon dual quadcore on Infiniband, Alexandre A. Vakhrouchev, 02/12/2008
- Re: [charm] Xeon dual quadcore on Infiniband, Eric Bohm, 02/14/2008
- Re: [charm] Xeon dual quadcore on Infiniband, Eric Bohm, 02/14/2008
- Message not available
- Re: [charm] Xeon dual quadcore on Infiniband, Alexandre A. Vakhrouchev, 02/14/2008
- Re: [charm] Xeon dual quadcore on Infiniband, Alexandre A. Vakhrouchev, 02/15/2008
- Re: [charm] Xeon dual quadcore on Infiniband, Alexandre A. Vakhrouchev, 02/14/2008
- Message not available
- Re: [charm] Xeon dual quadcore on Infiniband, Eric Bohm, 02/14/2008
- Re: [charm] Xeon dual quadcore on Infiniband, Eric Bohm, 02/14/2008
- Re: [charm] Xeon dual quadcore on Infiniband, Alexandre A. Vakhrouchev, 02/12/2008
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