Charm++ parallel programming system

[Jim Phillips <jim AT ks.uiuc.edu>]

Maybe the 6.5.1 release would work.  -Jim

On Thu, 29 Aug 2013, Phil Miller wrote:

> The undefined references to 'assert' are the result of a recent
> change, that will be fixed quickly.
>
> On Thu, Aug 29, 2013 at 2:07 PM, Bo Zhang 
> <zhang416 AT indiana.edu>
>  wrote:
> > Hello Jim,
> >
> > I swap and load the modules as you suggested. And I rebuilt the package
> > several times:
> >
> > Thu Aug 29 14:18:14 EDT 2013
> > Using the following build command:
> > ./build charm++ gemini_gni-crayxe craycc   hugepages   -j16
> > --with-production
> >
> > Thu Aug 29 14:48:27 EDT 2013
> > Using the following build command:
> > ./build charm++ gemini_gni-crayxe craycc  smp   persistent hugepages   -j16
> > --with-production
> >
> > Thu Aug 29 14:59:20 EDT 2013
> > Using the following build command:
> > ./build charm++ gemini_gni-crayxe   smp   persistent hugepages   -j16
> > --with-production
> >
> > Each time, the built was successful. But I still cannot make the
> > simplesayhello example. For the last set of build options I used, I got the
> > following the messages:
> >
> > zhang416@login1:~/repository/charm/gemini_gni-crayxe-hugepages-persistent-smp/tests/charm++/simplearrayhello>
> > make
> > ../../../bin/charmc   hello.ci
> > ../../../bin/charmc  -c hello.C
> > ../../../bin/charmc  -language charm++ -o hello hello.o
> > ../../../bin/../lib/libconv-util.a(sockRoutines.o): In function
> > `skt_lookup_ip':
> > sockRoutines.c:(.text+0x3a3): warning: Using 'gethostbyname' in statically
> > linked applications requires at runtime the shared libraries from the glibc
> > version used for linking
> > ../../../bin/../lib/libconv-util.a(persist-comm.o): In function
> > `compressFloatingPoint':
> > persist-comm.c:(.text+0x2f3): undefined reference to `assert'
> > ../../../bin/../lib/libconv-util.a(persist-comm.o): In function
> > `compressDouble':
> > persist-comm.c:(.text+0x451): undefined reference to `assert'
> > collect2: error: ld returned 1 exit status
> > Fatal Error by charmc in directory
> > /N/u/zhang416/BigRed2/repository/charm/gemini_gni-crayxe-hugepages-persistent-smp/tests/charm++/simplearrayhello
> >    Command CC -I/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/include
> > -I/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/include
> > -I/opt/cray-hss-devel/7.0.0/include
> > -I/opt/cray/krca/1.0.0-2.0401.36792.3.70.gem/include
> > -I/opt/cray/gni-headers/2.1-1.0401.5675.4.4.gem/include
> > -I/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/include -D_REENTRANT -rdynamic -o
> > hello -L../../../bin/../lib -I../../../bin/../include
> > ../../../bin/../lib/libldb-rand.o hello.o moduleinit22274.o
> > ../../../bin/../lib/libmemory-default.o
> > ../../../bin/../lib/libthreads-default.o -lckmain -lck -lconv-cplus-y
> > -lconv-core -lconv-util ../../../bin/../lib/custom_partitioner.o -lckqt
> > -lpthread -lrt -lz -ldl -lm returned error code 1
> > charmc exiting...
> > make: *** [hello] Error 1
> >
> > I look forward to hearing further instructions from you. Thank you.
> >
> > Bo
> >
> >
> >
> > On Aug 29, 2013, at 2:30 PM, Jim Phillips wrote:
> >
> >
> > For NAMD we use these modules:
> >
> > module swap PrgEnv-cray PrgEnv-gnu
> > module load rca
> > module load craype-hugepages8M
> >
> > And these sets of options:
> >
> > gemini_gni-crayxe hugepages persistent
> >
> > gemini_gni-crayxe hugepages persistent smp
> >
> > -Jim
> >
> >
> > On Thu, 29 Aug 2013, Phil Miller wrote:
> >
> > Going on what I can remember and intuit from what I see here, you may
> >
> > need to add the build option 'hugepages' to your build command. You
> >
> > should also ensure that you have one of the craype-hugepages* modules
> >
> > loaded.
> >
> >
> > I'm not sure why this error appeared though, and will check with the
> >
> > rest of the team on how we can prevent it in the future.
> >
> >
> > Thanks, and I hope that helps
> >
> >
> > Phil
> >
> >
> > On Thu, Aug 29, 2013 at 12:59 PM, Bo Zhang 
> > <zhang416 AT indiana.edu>
> >  wrote:
> >
> > Dear developing team:
> >
> >
> > This is Bo Zhang from Indiana University. I am trying to install charm++
> >
> > locally on a Cray XE6/XK7 machine. The build command used is:
> >
> >
> > './build charm++ gemini_gni-crayxe craycc      -j16  --with-production'
> >
> >
> > After running the command, it shows that charm++ was built successfully.
> >
> > Next, I followed the suggestion to try the sample program
> >
> > 'gemini_gni-crayxe-craycc/tests/charm++/simplearrayhello', but the make was
> >
> > terminated with error.
> >
> >
> > zhang416@login1:~/repository/charm/tests/charm++/simplearrayhello>
> >  make
> >
> > ../../../bin/charmc   hello.ci
> >
> > ../../../bin/charmc  -c hello.C
> >
> > ../../../bin/charmc  -language charm++ -o hello hello.o
> >
> > /opt/cray/xe-sysroot/4.1.40/usr/lib64/libhugetlbfs.a(hugeutils.o): In
> >
> > function `gethugepagesize':
> >
> > /usr/src/packages/BUILD/cray-libhugetlbfs-2.11/hugeutils.c:863: multiple
> >
> > definition of `gethugepagesize'
> >
> > ../../../bin/../lib/cray_tlbhack.o:(.text+0x0): first defined here
> >
> > /opt/cray/xe-sysroot/4.1.40/usr/lib64/libpthread.a(sem_open.o): In function
> >
> > `sem_open':
> >
> > /usr/src/packages/BUILD/glibc-2.11.3/nptl/sem_open.c:333: warning: the use
> >
> > of `mktemp' is dangerous, better use `mkstemp'
> >
> > ../../../bin/../lib/libconv-util.a(sockRoutines.o): In function
> >
> > `skt_lookup_ip':
> >
> > /N/hd00/zhang416/BigRed2/repository/charm/gemini_gni-crayxe-craycc/tmp/sockRoutines.c:295:
> >
> > warning: Using 'gethostbyname' in statically linked applications requires at
> >
> > runtime the shared libraries from the glibc version used for linking
> >
> > Fatal Error by charmc in directory
> >
> > /N/u/zhang416/BigRed2/repository/charm/tests/charm++/simplearrayhello
> >
> >   Command CC -I/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/include
> >
> > -I/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/include
> >
> > -I/opt/cray-hss-devel/7.0.0/include
> >
> > -I/opt/cray/krca/1.0.0-2.0401.36792.3.70.gem/include
> >
> > -I/opt/cray/gni-headers/2.1-1.0401.5675.4.4.gem/include
> >
> > -I/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/include -o hello
> >
> > -L../../../bin/../lib -I../../../bin/../include
> >
> > ../../../bin/../lib/libldb-rand.o hello.o moduleinit44124.o
> >
> > ../../../bin/../lib/libmemory-default.o
> >
> > ../../../bin/../lib/libthreads-default.o -lckmain -lck -lconv-cplus-y
> >
> > -lconv-core -lconv-util ../../../bin/../lib/custom_partitioner.o -lckqt -ldl
> >
> > -lrt ../../../bin/../lib/cray_tlbhack.o -lm returned error code 1
> >
> > charmc exiting...
> >
> > make: *** [hello] Error 1
> >
> >
> > Would you please let me know how to resolve this issue? Thank you very much.
> >
> >
> > Sincerely,
> >
> >
> > Bo
> >
> >
> >
> >
> >
> >
> >
> >
> > _______________________________________________
> >
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> >
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> >
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> >
> >
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> >
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> >
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> >
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> >
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