Charm++ parallel programming system

[Evan Ramos <evan AT hpccharm.com>]

Hi Yonglan,

It looks like the Intel compiler is not installed on your system. Try removing the "icc" part of the build command to use the compiler Charm++ determines to be the default, which is GCC for verbs-linux-x86_64.

Regards,

Evan A. Ramos

Software Engineer

Charmworks, Inc.

On Thu, Jul 19, 2018 at 7:03 PM, Yonglan Liu <yl117 AT zips.uakron.edu> wrote:

Hi,

I am Yonglan Liu, Ph.D student in the University of AKron. I am trying to install NAMD2.12 GPU and download the NAMD_2.11_Source.tar.gz and follow the instruction on https://www.nvidia.com/en-us/data-center/gpu-accelerated-applications/namd/.  When I build charm++ with the code of ./build charm++ verbs-linux-x86_64 icc smp --with-production. It shows the error as follows:

Selected Compiler: icc

Selected Options:  smp

Creating dir: verbs-linux-x86_64-smp-icc

Creating dir: verbs-linux-x86_64-smp-icc/tmp

Copying src/scripts/Makefile to verbs-linux-x86_64-smp-icc/tmp

Soft-linking over bin

Soft-linking over lib

Soft-linking over lib_so

Soft-linking over include

Soft-linking over tmp

Generating verbs-linux-x86_64-smp-icc/tmp/conv-mach-pre.sh

Generating verbs-linux-x86_64-smp-icc/tmp/conv-mach-opt.h, conv-mach-opt.sh

Performing 'make basics OPTS=-optimize -production QUIET= CONFIG_OPTS=--disable-controlpoint --disable-tracing --disable-tracing-commthread --disable-charmdebug --disable-replay --disable-error-checking --disable-stats ' in verbs-linux-x86_64-smp-icc/tmp

pwd

/home/yonglan/NAMD_2.11_Source/charm-6.7.0/verbs-linux-x86_64-smp-icc/tmp

find . -type l -exec rm {} \;

rm -rf QuickThreads

rm -rf libs

rm -rf ../bin ; mkdir ../bin

if case `cat .vdir` in *win32*) true;; *win64*) true;; *) false;; esac; then \

cp -f ../../src/arch/`cat .vdir | awk -F- '{print $2}'`/unix2nt* ../bin; \

cp -f ../../src/arch/win32/createlink.exe ../bin; \

fi

rm -rf ../lib ; mkdir ../lib

rm -rf ../lib_so ; mkdir ../lib_so; touch ../lib_so/.charmso

rm -rf ../examples

rm -rf ../tests

rm -rf ../doc ; ln -s ../doc ../doc

../../src/scripts/gatherflat ../../src/scripts .

./gatherflat ../../src/conv-core        .

./gatherflat ../../src/conv-ldb         .

./gatherflat ../../src/conv-ccs         .

./gatherflat ../../src/conv-perf .

./gatherflat ../../src/ck-core          .

./gatherflat ../../src/ck-perf          .

./gatherflat ../../src/ck-tune          .

./gatherflat ../../src/ck-ldb           .

./gatherflat ../../src/ck-cp            .

./gatherflat ../../src/langs/simplemsg  .

./gatherflat ../../src/langs/pvmc       .

./gatherflat ../../src/langs/bluegene   .

./gatherflat ../../src/langs/f90charm   .

./gatherflat ../../src/xlatcpm          .

./gathertree ../../src/QuickThreads     QuickThreads

./gathertree ../../src/libs             libs

./gathertree ../../src/arch/util        .

./gathertree ../../src/util             .

./gathertree ../../src/langs            langs

./gathertree ../../src/langs/jade       langs/jade

./gathertree ../../src/arch/common      .

./gathertree ../../src/arch/`cat .gdir` .

test -f ../../src/arch/`cat .gdir`/gdir_link && cat ../../src/arch/`cat .gdir`/gdir_link > .gdir.new && ./gathertree ../../src/arch/`cat .gdir.new`      . || true

./gatherflat ../../src/arch/`cat .vdir` .

./gathertree ../../src/../examples             ../examples

./gathertree ../../src/../tests                ../tests

rm -f ../bin/dep.pl ; cp dep.pl ../bin/

chmod +x charmc

./system_ln  ../tmp/charmc ../bin/

rm -rf ../include ; mkdir ../include

./system_ln  ../tmp/conv-*.*h ../include

./system_ln  ../tmp/cc-*.*h ../include

./system_ln  ../tmp/conv-mach-opt.sh ../include

if [ -x ./special.sh ] ; then SRCBASE=../../src ./special.sh ; fi

./special.sh: 1: ../include/cc-icc.sh: icc: not found

ICC compiler not found!

make: *** [dirs+sources] Error 1

  

Could you please give me some advice. 

Best, 

Yonglan